Mehmet Eren Ahsen, Robert Vogel, et al.
Bioinformatics Advances
Near a bifurcation point, the response time of a system is expected to diverge due to the phenomenon of critical slowing down. We investigate critical slowing down in well-mixed stochastic models of biochemical feedback by exploiting a mapping to the mean-field Ising universality class. We analyze the responses to a sudden quench and to continuous driving in the model parameters. In the latter case, we demonstrate that our class of models exhibits the Kibble-Zurek collapse, which predicts the scaling of hysteresis in cellular responses to gradual perturbations. We discuss the implications of our results in terms of the tradeoff between a precise and a fast response. Finally, we use our mapping to quantify critical slowing down in T cells, where the addition of a drug is equivalent to a sudden quench in parameter space.
Mehmet Eren Ahsen, Robert Vogel, et al.
Bioinformatics Advances
Mehmet Eren Ahsen, Robert Vogel, et al.
Journal of Computational Biology
Mehmet Eren Ahsen, Robert Vogel, et al.
JMLR
Amir Erez, Tommy A. Byrd, et al.
Physical Review E