BioDash: A semantic web dashboard for drug development
Eric K. Neumann, Dennis Quan
PSB 2006
OBJECTIVES : Value assessment of treatments is critical for determining coverage policy and patient / provider choice of treatment. Such assessment requires reliably estimating treatment effect across multiple outcomes and in diverse sub populations based on clinical and demographic characteristics. METHODS : We developed an end-to-end modular framework for discovering sub-populations of interest from retrospective real-world data using causal analysis. For a target disease or condition, we (1) Extract patient features and outcomes from a health records database; (2) Train causal analysis models of choice to predict the counterfactual outcomes for each patient in each optional treatment; (3) Evaluate and optimize each model for accuracy and generalizability; and (4) Identify and characterize sub-populations satisfying context-specific treatment response criteria. An interactive visualization module displays multiple average predicted outcome values for each treatment on a given sub-population, and facilitates decision making by easily exploring treatment options. RESULTS : We applied and evaluated the framework over a rheumatoid arthritis cohort extracted from IBM Truven Marketscan® Research Database, consisting of 23,100 patients who received one of 9 biologic drugs during 2010-2016. We examined 27 clinical, utilization and cost outcomes, aggregated over 12 months following treatment initiation, and 240 demographic and clinical covariates extracted from a 12 months baseline period. Doubly robust models were trained and evaluated for all treatment-outcome pairs. We systematically extracted sub-populations for two criteria: (a) Stratification by clinical or demographic characteristics (e.g. age, ethnicity, comorbidities) to differentiate treatment effect across multiple outcomes, and (b) Identification and characterization of the best responders for each treatment. CONCLUSIONS : Our framework enables systematic comparison of competing treatments across multiple outcomes, discovering and characterizing sub-populations who might benefit from specific treatments and thus supports decision making related to matching optimal treatment to patients.
Eric K. Neumann, Dennis Quan
PSB 2006
Wesam Alramadeen, Yu Ding, et al.
IISE Transactions on Healthcare Systems Engineering
Andreana Gomez, Sergio Gonzalez, et al.
Toxics
John M. Prager, Jennifer J. Liang, et al.
AMIA Joint Summits on Translational Science 2017