Publications

1609 results for Machine Learning

Improving Large Language Models for Programmatic Text Understanding via Iterative Instruction Refinement
- - Lecheng Yan
  - Chenyang Lyu
  - et al.
- 2025
- ICIC 2025
Conference paper
AutoPeptideML 2: An open source library for democratizing machine learning for peptide bioactivity prediction
- - Raúl Fernández Díaz
  - Lam Thanh Hoang
  - et al.
- 2025
- ISMB 2025
Talk
Improving Transcriptomic Foundation Models Through Gene-Level Error Analysis and Adaptive Masking
- - Michael Morris Danziger
  - Bharath Dandala
  - et al.
- 2025
- ISMB 2025
Poster
Harnessing biomedical foundation models for genomic feature engineering to investigate patient drug response
- - Laura Gardiner
  - Stephen Checkley
  - et al.
- 2025
- ISMB 2025
Poster
BioVERSE: A Modular Framework for Integrating Biomedical Modalities with Language Models in Precision Medicine
- - Ching-Huei Tsou
  - Michal Ozery-Flato
  - et al.
- 2025
- ISMB 2025
Poster
DOES YOUR MODEL UNDERSTAND GENES? A MODALITY-AGNOSTIC BENCHMARK OF GENE PROPERTIES
- - Yoav Kan-Tor
  - Michael Morris Danziger
  - et al.
- 2025
- ISMB 2025
Poster
Transcriptomic Foundation Model Evaluation: Quantifying Expression Level Discrimination Through Null Sample Testing
- - Noa Moriel
  - Michael Morris Danziger
  - et al.
- 2025
- ISMB 2025
Poster
Agentic AI for bioinformatics workflows
- - Jennifer Kelly
  - Ashley Evans
  - et al.
- 2025
- ISMB 2025
Poster
Invariance Makes LLM Unlearning Resilient Even to Unanticipated Downstream Fine-Tuning
- - Changsheng Wang
  - Yihua Zhang
  - et al.
- 2025
- ICML 2025
Conference paper
Symmetry-Driven Discovery of Dynamical Variables in Molecular Simulations
- - Jeet Mohapatra
  - Nima Dehmamy
  - et al.
- 2025
- ICML 2025
Conference paper