AutoPeptideML 2: An open source library for democratizing machine learning for peptide bioactivity prediction
- 2025
- ISMB 2025
Talk
Publications
797 results for Life Sciences
Designing a Multi-Agent AI Framework to Mine Scientific Literature and Experiment Datasets to Support and Enrich Single-Cell Analyses
- 2025
- ISMB 2025
PosterAgentic AI for bioinformatics workflows
- 2025
- ISMB 2025
PosterBioVERSE: A Modular Framework for Integrating Biomedical Modalities with Language Models in Precision Medicine
- 2025
- ISMB 2025
PosterDOES YOUR MODEL UNDERSTAND GENES? A MODALITY-AGNOSTIC BENCHMARK OF GENE PROPERTIES
- Yoav Kan-Tor
- Michael Morris Danziger
- et al.
- 2025
- ISMB 2025
PosterImproving Transcriptomic Foundation Models Through Gene-Level Error Analysis and Adaptive Masking
- Michael Morris Danziger
- Bharath Dandala
- et al.
- 2025
- ISMB 2025
PosterTranscriptomic Foundation Model Evaluation: Quantifying Expression Level Discrimination Through Null Sample Testing
- Noa Moriel
- Michael Morris Danziger
- et al.
- 2025
- ISMB 2025
PosterAligning Protein Conformation Ensemble Generation with Physical Feedback
- Jiarui Lu
- Xiaoyin Chen
- et al.
- 2025
- ICML 2025
Conference paperLearning interpretable positional encodings in transformers depends on initialization
- Taku Ito
- Luca Cocchi
- et al.
- 2025
- ICML 2025
Workshop paperAligning foundation models on encoded synthetic omic data for patient stratification
- Nikita Janakarajan
- Antonio Foncubierta
- et al.
- 2025
- ICDH 2025
Short paper